Input data | QTL mapping results | GWAS results | Differential expression results | Candidate genes | Creating a HIDECAN plot | Removing empty chromosomes | Selecting chromosomes and genomic positions | Colour genes by log2(fold-change) | More than one QTL, GWAS, DE or candidate gene list | Defining chromosomes length | Controlling the plot properties | Creating a Manhattan plot | Controlling the aesthetics (colours, point shapes, labels) of the tracks | Viewport error

Formatting input data | Computing chromosome length | Applying threshold | Creating the HIDECAN plot